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LOC4343216 serine/threonine-protein kinase STY17 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343216, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4343216
Gene description
serine/threonine-protein kinase STY17
Locus tag
OSNPB_070475900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4343216 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (17364092..17375126, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (17198547..17209525, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein SAUR68 Neighboring gene probable rRNA-processing protein EBP2 homolog Neighboring gene uncharacterized LOC112939591 Neighboring gene protein CTR9 homolog Neighboring gene uncharacterized LOC136357312

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein kinase STY17
Names
Os07g0475900
P0571D04.125
putative serine/threonine protein kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    17364092..17375126 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791912.3 → XP_015647398.1  serine/threonine-protein kinase STY17 isoform X2

    UniProtKB/TrEMBL
    A0A0P0X6M1, B8B5Z6, B9FX64
    Conserved Domains (2) summary
    cd04928
    Location:140 → 204
    ACT_TyrKc; Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains
    cd13999
    Location:259 → 501
    STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases

  2. XM_015791911.3 → XP_015647397.1  serine/threonine-protein kinase STY17 isoform X1

    UniProtKB/TrEMBL
    A0A0P0X6M1
    Conserved Domains (3) summary
    cd04928
    Location:140 → 204
    ACT_TyrKc; Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains
    smart00219
    Location:253 → 501
    TyrKc; Tyrosine kinase, catalytic domain
    cd13999
    Location:259 → 501
    STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
Nucleotide Protein
Heading Accession and Version

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