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LOC4343144 uncharacterized LOC4343144 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343144, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4343144
Gene description
uncharacterized LOC4343144
Locus tag
OSNPB_070456400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4343144 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (16033591..16038763, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (15868898..15874102, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357421 Neighboring gene transfer RNA proline (anticodon CGG) Neighboring gene phosphatidylinositol/phosphatidylcholine transfer protein SFH11 Neighboring gene endo-1,4-beta-xylanase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4343144
Names
OSJNBa0027N13.116
Os07g0456400
luc7-like protein 3
putative salt tolerance protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    16033591..16038763 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792123.3 → XP_015647609.1  uncharacterized protein LOC4343144

    UniProtKB/TrEMBL
    A0A0P0X5N1, A3BJE7, Q84YS0
    Conserved Domains (2) summary
    PRK12678
    Location:230 → 330
    PRK12678; transcription termination factor Rho; Provisional
    pfam03194
    Location:2 → 248
    LUC7; LUC7 N_terminus

  2. XM_026027036.2 → XP_025882821.1  uncharacterized protein LOC4343144

    UniProtKB/TrEMBL
    A0A0P0X5N1, A3BJE7, Q84YS0
    Conserved Domains (2) summary
    PRK12678
    Location:230 → 330
    PRK12678; transcription termination factor Rho; Provisional
    pfam03194
    Location:2 → 248
    LUC7; LUC7 N_terminus

RNA

  1. XR_010742586.1 RNA Sequence

  2. XR_003243469.2 RNA Sequence

  3. XR_010742585.1 RNA Sequence

  4. XR_010742584.1 RNA Sequence

  5. XR_010742587.1 RNA Sequence

  6. XR_001547783.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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