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LOC4343049 probable cellulose synthase A catalytic subunit 3 [UDP-forming] [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343049, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4343049
Gene description
probable cellulose synthase A catalytic subunit 3 [UDP-forming]
Locus tag
OSNPB_070424400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CESA3; OsCesA3
Expression
Broad expression in flowers (RPKM 109.5), roots before flowering (RPKM 53.3) and 6 other tissues See more
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Genomic context

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See LOC4343049 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (13896752..13902724, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (13741571..13747205, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene transcription termination factor MTERF2, chloroplastic Neighboring gene uncharacterized LOC107281706 Neighboring gene probable folate-biopterin transporter 9, chloroplastic Neighboring gene uncharacterized LOC136357341

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable cellulose synthase A catalytic subunit 3 [UDP-forming]
Names
LOC_Os07g24190
P0409D09.11
putative cellulose synthase
NP_001389980.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403051.1 → NP_001389980.1  probable cellulose synthase A catalytic subunit 3 [UDP-forming]

    Status: VALIDATED

    Source sequence(s)
    AK121193, CB677499, CI750127, CI752142
    UniProtKB/Swiss-Prot
    B7F6W2, Q69V23
    UniProtKB/TrEMBL
    B9FWX1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    13896752..13902724 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q69V23.1 GenPept UniProtKB/Swiss-Prot:Q69V23

Gene LinkOut

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Molecular Biology Databases
Research Materials