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LOC4343038 sterol 3-beta-glucosyltransferase UGT80A2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343038, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4343038
Gene description
sterol 3-beta-glucosyltransferase UGT80A2
Locus tag
OSNPB_070419500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1123_B01.122
Expression
Ubiquitous expression in roots before flowering (RPKM 18.5), flower buds (RPKM 10.0) and 6 other tissues See more
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Genomic context

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See LOC4343038 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (13554606..13567462)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (13399134..13412008)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein At5g41330 Neighboring gene thaumatin-like protein 1b Neighboring gene uncharacterized LOC136357506 Neighboring gene uncharacterized LOC136357371 Neighboring gene uncharacterized LOC107281690

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterol 3-beta-glucosyltransferase UGT80A2
Names
Os07g0419500
putative UDP-glucose:sterol glucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    13554606..13567462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792463.3 → XP_015647949.1  sterol 3-beta-glucosyltransferase UGT80A2 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YR50, B7F986, B8B5G7, B9FWV7, Q8H5W0
    Conserved Domains (1) summary
    cd03784
    Location:129 → 545
    GT1_Gtf-like; UDP-glycosyltransferases and similar proteins

  2. XM_015792464.2 → XP_015647950.1  sterol 3-beta-glucosyltransferase UGT80A2 isoform X3

    UniProtKB/TrEMBL
    Q8H5W0
    Conserved Domains (2) summary
    cd03784
    Location:51 → 467
    GT1_Gtf_like; This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the ...
    COG1819
    Location:50 → 462
    YjiC; UDP:flavonoid glycosyltransferase YjiC, YdhE family [Carbohydrate transport and metabolism]

  3. XM_026027071.2 → XP_025882856.1  sterol 3-beta-glucosyltransferase UGT80A2 isoform X2

    UniProtKB/TrEMBL
    Q8H5W0
    Conserved Domains (1) summary
    cd03784
    Location:102 → 518
    GT1_Gtf_like; This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the ...

  4. XM_015792465.3 → XP_015647951.1  sterol 3-beta-glucosyltransferase UGT80A2 isoform X3

    UniProtKB/TrEMBL
    Q8H5W0
    Conserved Domains (2) summary
    cd03784
    Location:51 → 467
    GT1_Gtf_like; This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the ...
    COG1819
    Location:50 → 462
    YjiC; UDP:flavonoid glycosyltransferase YjiC, YdhE family [Carbohydrate transport and metabolism]

  5. XM_066312512.1 → XP_066168609.1  sterol 3-beta-glucosyltransferase UGT80A2 isoform X4

Nucleotide Protein
Heading Accession and Version

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