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LOC4342959 S-adenosylmethionine carrier 1, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342959, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4342959
Gene description
S-adenosylmethionine carrier 1, chloroplastic/mitochondrial
Locus tag
OSNPB_070295000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 8.3), flowers (RPKM 7.1) and 6 other tissues See more
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Genomic context

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See LOC4342959 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (11596970..11600779, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (11505830..11509686, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g71490 Neighboring gene uncharacterized protein At4g15970 Neighboring gene UPF0235 protein At5g63440 Neighboring gene nuclear pore complex protein NUP54

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosyl-L-methionine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
S-adenosylmethionine carrier 1, chloroplastic/mitochondrial
Names
B1120F06.131
Os07g0295000
mitochondrial aspartate-glutamate carrier protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    11596970..11600779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789874.3 → XP_015645360.1  S-adenosylmethionine carrier 1, chloroplastic/mitochondrial

    UniProtKB/TrEMBL
    A0A0P0X510, A2YKE7, Q6YVE7
    Conserved Domains (1) summary
    PTZ00168
    Location:17 → 266
    PTZ00168; mitochondrial carrier protein; Provisional

  2. XM_015789875.3 → XP_015645361.1  S-adenosylmethionine carrier 1, chloroplastic/mitochondrial

    UniProtKB/TrEMBL
    A0A0P0X510, A2YKE7, Q6YVE7
    Conserved Domains (1) summary
    PTZ00168
    Location:17 → 266
    PTZ00168; mitochondrial carrier protein; Provisional

  3. XM_026026873.2 → XP_025882658.1  S-adenosylmethionine carrier 1, chloroplastic/mitochondrial

    UniProtKB/TrEMBL
    A0A0P0X510, A2YKE7, Q6YVE7
    Conserved Domains (1) summary
    PTZ00168
    Location:17 → 266
    PTZ00168; mitochondrial carrier protein; Provisional
Nucleotide Protein
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