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LOC4342750 protein SLOW WALKER 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342750, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4342750
Gene description
protein SLOW WALKER 1
Locus tag
OSNPB_070224900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4342750 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (7029514..7031353)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (6949927..6951984)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene calmodulin-1 Neighboring gene large ribosomal subunit protein eL24 Neighboring gene uncharacterized LOC4342752 Neighboring gene NAC domain-containing protein 67-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SLOW WALKER 1
Names
OSJNBa0066H10.103
Os07g0224900
P0668C05.122
WD domain, G-beta repeat domain-containing protein
transducin /WD-40 repeat protein family-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    7029514..7031353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789230.3 → XP_015644716.1  protein SLOW WALKER 1

    UniProtKB/TrEMBL
    A2YJJ8, Q69PM9, Q8LH68
    Conserved Domains (3) summary
    sd00039
    Location:51 → 88
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:384 → 527
    UTP15_C; UTP15 C terminal
    cl29593
    Location:92 → 336
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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Research Materials