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LOC4342703 probable galactinol--sucrose galactosyltransferase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342703, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4342703
Gene description
probable galactinol--sucrose galactosyltransferase 2
Locus tag
OSNPB_070209100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1136_A05.22
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Genomic context

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See LOC4342703 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (5966869..5970433, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (5890566..5894144, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4342701 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like Neighboring gene uncharacterized LOC4342704 Neighboring gene uncharacterized LOC4342705

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables raffinose alpha-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galactinol--sucrose galactosyltransferase 2
Names
Os07g0209100
putative Sip1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    5966869..5970433 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791394.3 → XP_015646880.1  probable galactinol--sucrose galactosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A0P0X431, A2YJD0, Q6ZLJ9
    Conserved Domains (1) summary
    cl38930
    Location:1 → 763
    AmyAc_family; Alpha amylase catalytic domain family

  2. XM_015791395.3 → XP_015646881.2  probable galactinol--sucrose galactosyltransferase 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials