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LOC4342624 tRNA ligase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342624, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4342624
Gene description
tRNA ligase 1
Locus tag
OSNPB_070191700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4342624 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (5010989..5024323)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4949779..4963242)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene ABC transporter G family member STR2 Neighboring gene protein CYSTEINE-RICH TRANSMEMBRANE MODULE 11 Neighboring gene AAA-ATPase At3g28580 Neighboring gene mitochondrial import inner membrane translocase subunit TIM14-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA ligase 1
Names
OSJNBa0049I08.10
Os07g0191700
putative translation elongation factor EF-1 alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    5010989..5024323
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791934.3 → XP_015647420.1  tRNA ligase 1

    UniProtKB/TrEMBL
    A0A0N7KN25, B8B852, Q0D813, Q69S66
Nucleotide Protein
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