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LOC4342420 peroxisomal (S)-2-hydroxy-acid oxidase GLO5-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342420, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4342420
Gene description
peroxisomal (S)-2-hydroxy-acid oxidase GLO5-like
Locus tag
OSNPB_070152900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GLO5; GOX 3; OsGLO5; OsJ_23125
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Genomic context

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See LOC4342420 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (2812118..2815687)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (2797691..2801348)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable glutathione S-transferase parC Neighboring gene peroxisomal membrane protein 13 Neighboring gene protein TIFY 5 Neighboring gene autonomous transposable element EN-1 mosaic protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Suppression of glycolate oxidase causes glyoxylate accumulation that inhibits photosynthesis through deactivating Rubisco in rice. Lu Y, et al. Physiol Plant, 2014 Mar. PMID 24102419
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables (S)-2-hydroxy-acid oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables FMN binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycolate oxidase 5
Names
B1364A02.33-1
B1364A02.33-2
GOX 5
Glycolate oxidase 5
LOC_Os07g05820
OSJNBb0050B07.1-1
OSJNBb0050B07.1-2
Short chain alpha-hydroxy acid oxidase GLO5
peroxisomal (S)-2-hydroxy-acid oxidase GLO5
putative (S)-2-hydroxy-acid oxidase
putative glycolate oxidase
NP_001389947.1
XP_015646860.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403018.1 → NP_001389947.1  glycolate oxidase 5

    Status: VALIDATED

    Source sequence(s)
    CB646042, CB664710, CI219590
    UniProtKB/Swiss-Prot
    A0A0P0X2P6, B8B7C5, B9FVJ4, Q6YT73

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    2812118..2815687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791374.2 → XP_015646860.1  glycolate oxidase 5 isoform X1

    Conserved Domains (2) summary
    PLN02979
    Location:6 → 336
    PLN02979; glycolate oxidase
    cd02809
    Location:22 → 328
    alpha_hydroxyacid_oxid_FMN; Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6YT73.1 GenPept UniProtKB/Swiss-Prot:Q6YT73

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials