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LOC4342055 alpha-amylase isozyme 2A-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342055, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4342055
Gene description
alpha-amylase isozyme 2A-like
Locus tag
OSNPB_060713800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
AMYC2; amy2A; AMY1.5; OsJ_22644; OJ1136_F03.12
Expression
Biased expression in flower buds (RPKM 20.7), milk grains (RPKM 3.6) and 3 other tissues See more
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Genomic context

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See LOC4342055 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (31131530..31135667)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30262783..30266916)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein At4g14103 Neighboring gene uncharacterized LOC107281435 Neighboring gene uncharacterized LOC4342056 Neighboring gene PHAF1 protein At3g51130

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-amylase isozyme 2A
Names
1,4-alpha-D-glucan glucanohydrolase
Alpha-amylase isozyme C2
LOC_Os06g49970
NP_001408833.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421904.1 → NP_001408833.1  alpha-amylase isozyme 2A precursor

    Status: VALIDATED

    Source sequence(s)
    AK059671, CI023585, CI393435, CI564324, CI604813
    UniProtKB/Swiss-Prot
    B7E3X5, Q0D9J1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    31131530..31135667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0D9J1.1 GenPept UniProtKB/Swiss-Prot:Q0D9J1

Gene LinkOut

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