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LOC4341824 probable alpha-glucosidase Os06g0675700 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341824, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4341824
Gene description
probable alpha-glucosidase Os06g0675700
Locus tag
OSNPB_060675700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Maltase; OsJ_22347; B1153E06.2
Expression
Biased expression in milk grains (RPKM 85.9), mature seeds (RPKM 19.1) and 2 other tissues See more
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Genomic context

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See LOC4341824 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28911832..28924437, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28045477..28058206, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene endochitinase A Neighboring gene NAC domain-containing protein 21/22 Neighboring gene metal transporter Nramp3-like Neighboring gene uncharacterized LOC107281176

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-glucosidase
Names
LOC_Os06g46284
putative high pI alpha-glucosidase
NP_001408632.1
XP_015643119.1
XP_025881777.2
XP_066167276.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421703.1 → NP_001408632.1  alpha-glucosidase precursor

    Status: VALIDATED

    Source sequence(s)
    AK119824, AP014962, AU093371
    UniProtKB/Swiss-Prot
    Q0DA62, Q653V7
    UniProtKB/TrEMBL
    B8B1F4

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    28911832..28924437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026025992.2 → XP_025881777.2  alpha-glucosidase isoform X2

    UniProtKB/TrEMBL
    A2YG59

  2. XM_066311179.1 → XP_066167276.1  alpha-glucosidase isoform X1

    UniProtKB/TrEMBL
    A2YG59

  3. XM_015787633.3 → XP_015643119.1  alpha-glucosidase isoform X3

    UniProtKB/TrEMBL
    B8B1F4
    Conserved Domains (4) summary
    cd06602
    Location:309 → 663
    GH31_MGAM_SI_GAA; maltase-glucoamylase, sucrase-isomaltase, lysosomal acid alpha-glucosidase
    cd14752
    Location:186 → 309
    GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
    pfam01055
    Location:290 → 755
    Glyco_hydro_31; Glycosyl hydrolases family 31
    pfam16863
    Location:66 → 195
    NtCtMGAM_N; N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q653V7.1 GenPept UniProtKB/Swiss-Prot:Q653V7

Gene LinkOut

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