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LOC4341740 ubiquitin-conjugating enzyme E2 22 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341740, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341740
Gene description
ubiquitin-conjugating enzyme E2 22
Locus tag
OSNPB_060660700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 32.8), roots before flowering (RPKM 30.0) and 6 other tissues See more
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Genomic context

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See LOC4341740 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28084501..28087926)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27219533..27223004)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 Neighboring gene glutathione S-transferase T3 Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 3 Neighboring gene uncharacterized LOC136356862 Neighboring gene uncharacterized LOC136356861

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ubiquitin-conjugating enzyme E2 22
Names
OSJNBa0051O02.25
Os06g0660700
putative ubiquitin carrier protein E2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    28084501..28087926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789043.3 → XP_015644529.1  ubiquitin-conjugating enzyme E2 22 isoform X2

    UniProtKB/TrEMBL
    A0A0P0WZL6, Q651V2
    Conserved Domains (1) summary
    cd00195
    Location:12 → 151
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

  2. XM_015789044.3 → XP_015644530.1  ubiquitin-conjugating enzyme E2 22 isoform X2

    UniProtKB/TrEMBL
    A0A0P0WZL6, Q651V2
    Conserved Domains (1) summary
    cd00195
    Location:12 → 151
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

  3. XM_026026051.2 → XP_025881836.1  ubiquitin-conjugating enzyme E2 22 isoform X1

    UniProtKB/TrEMBL
    A0A0P0WZL6
    Conserved Domains (1) summary
    cd00195
    Location:61 → 200
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
Nucleotide Protein
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