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LOC4341706 uncharacterized LOC4341706 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341706, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4341706
Gene description
uncharacterized LOC4341706
Locus tag
OSNPB_060653800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0709F06.4
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Genomic context

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See LOC4341706 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27643129..27645976, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26778934..26781812, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene transcription factor IBH1-like 1 Neighboring gene uncharacterized LOC4341705 Neighboring gene protein transport protein Sec61 subunit gamma-like Neighboring gene ubiquitin carboxyl-terminal hydrolase 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4341706
Names
OSJNBa0085J13.21
Os06g0653800
U5 small nuclear ribonucleoprotein 40 kDa protein
WD domain, G-beta repeat domain-containing protein
putative U5 snRNP-specific 40 kDa protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    27643129..27645976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787600.3 → XP_015643086.1  uncharacterized protein LOC4341706

    UniProtKB/TrEMBL
    A2YFR3, B9FQ97, Q0DAG8, Q67WC9
    Conserved Domains (2) summary
    cd00200
    Location:49 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:57 → 94
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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