U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4341695 DNA-directed RNA polymerase 3B, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341695, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4341695
Gene description
DNA-directed RNA polymerase 3B, chloroplastic
Locus tag
OSNPB_060652000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RpoT2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4341695 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27544178..27554033)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26680175..26690053)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene probable protein phosphatase 2C 58 Neighboring gene hydrophobic protein LTI6A-like Neighboring gene uncharacterized LOC4341696 Neighboring gene heptahelical transmembrane protein ADIPOR2-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of a rice nuclear-encoded plastid RNA polymerase gene OsRpoTp. Kusumi K, et al. Plant Cell Physiol, 2004 Sep. PMID 15509842
  2. Sequences homologous to yeast mitochondrial and bacteriophage T3 and T7 RNA polymerases are widespread throughout the eukaryotic lineage. Cermakian N, et al. Nucleic Acids Res, 1996 Feb 15. PMID 8604305, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mitochondrial DNA-directed RNA polymerase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA-directed RNA polymerase 3B, chloroplastic
Names
Os06g0652000
P0453H04.42
T3/T7-like RNA polymerase
T7 bacteriophage-type single subunit RNA polymerase
putative T7 bacteriophage-type single subunit RNA polymerase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    27544178..27554033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788508.3 → XP_015643994.1  DNA-directed RNA polymerase 3B, chloroplastic

    UniProtKB/TrEMBL
    A2YFP7, Q84LK5
    Conserved Domains (2) summary
    COG5108
    Location:117 → 952
    RPO41; Mitochondrial DNA-directed RNA polymerase [Transcription]
    pfam00940
    Location:562 → 952
    RNA_pol; DNA-dependent RNA polymerase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials