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LOC4341642 probable sucrose-phosphate synthase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341642, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4341642
Gene description
probable sucrose-phosphate synthase 3
Locus tag
OSNPB_060643800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SPS3; SPS6; OsSPS3F; P0017B12.4
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Genomic context

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See LOC4341642 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27105798..27114259, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26241947..26250408, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene formamidopyrimidine-DNA glycosylase Neighboring gene heptahelical transmembrane protein ADIPOR1-like Neighboring gene phosphoenolpyruvate phosphatase Neighboring gene ER membrane protein complex subunit 7 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sucrose-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable sucrose-phosphate synthase 3
Names
LOC_Os06g43630
P0416A11.37
Sucrose phosphate synthase 3F
UDP-glucose-fructose-phosphate glucosyltransferase
putative sucrose-phosphate synthase
NP_001408592.1
XP_015643377.1
XP_015643380.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421663.1 → NP_001408592.1  probable sucrose-phosphate synthase 3

    Status: VALIDATED

    Source sequence(s)
    AP014962

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    27105798..27114259 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787894.2 → XP_015643380.1  probable sucrose-phosphate synthase 3 isoform X2

    UniProtKB/Swiss-Prot
    Q0DAM8, Q67WN8
    UniProtKB/TrEMBL
    B9FQ59
    Conserved Domains (1) summary
    TIGR02468
    Location:1 → 972
    sucrsPsyn_pln; sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant

  2. XM_015787891.3 → XP_015643377.1  probable sucrose-phosphate synthase 3 isoform X1

    UniProtKB/TrEMBL
    B9FQ59
    Conserved Domains (2) summary
    cd03800
    Location:218 → 710
    GT1_Sucrose_synthase; This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose ...
    TIGR02468
    Location:1 → 1019
    sucrsPsyn_pln; sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q67WN8.1 GenPept UniProtKB/Swiss-Prot:Q67WN8

Gene LinkOut

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Molecular Biology Databases
Research Materials