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LOC4341591 amino acid transporter AVT6A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341591, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4341591
Gene description
amino acid transporter AVT6A
Locus tag
OSNPB_060633800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4341591 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (26553750..26557349)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25690102..25693793)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene bZIP transcription factor 2-like Neighboring gene uncharacterized LOC4341589 Neighboring gene uncharacterized LOC4341592 Neighboring gene nuclear intron maturase 4, mitochondrial Neighboring gene uncharacterized LOC4341593

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-amino acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amino acid transporter AVT6A
Names
Os06g0633800
P0505A04.37
putative system A transporter
sodium-coupled neutral amino acid transporter 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    26553750..26557349
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787834.3 → XP_015643320.1  amino acid transporter AVT6A

    UniProtKB/TrEMBL
    B8B0G3, B9FQ21, Q0DAS7, Q67VL0
    Conserved Domains (1) summary
    cl00456
    Location:41 → 411
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein
Heading Accession and Version

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