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LOC4341571 probable glucomannan 4-beta-mannosyltransferase 9 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341571, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4341571
Gene description
probable glucomannan 4-beta-mannosyltransferase 9
Locus tag
OSNPB_060625700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CSLA9; OsCslA9; OsJ_22033; OsJ_021176
Expression
Broad expression in flower buds (RPKM 7.5), milk grains (RPKM 4.3) and 4 other tissues See more
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Genomic context

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See LOC4341571 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (26094201..26098835)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25231174..25235897)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene peroxiredoxin-2E-1, chloroplastic-like Neighboring gene uncharacterized LOC136357106 Neighboring gene pentatricopeptide repeat-containing protein At4g16470 Neighboring gene potassium transporter 10-like Neighboring gene uncharacterized LOC112939414

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable glucomannan 4-beta-mannosyltransferase 9
Names
Cellulose synthase-like protein A9
Glucomannan synthase
LOC_Os06g42020
Mannan synthase 9
OSJNBa0072A21.15
probable mannan synthase 9
putative glycosyltransferase 1
NP_001408581.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421652.1 → NP_001408581.1  probable glucomannan 4-beta-mannosyltransferase 9

    Status: VALIDATED

    Source sequence(s)
    AK242831, CI650271
    UniProtKB/Swiss-Prot
    B9FQ03, Q0DAU5, Q67VS7, Q944E5
    UniProtKB/TrEMBL
    B8B0E3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    26094201..26098835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q67VS7.1 GenPept UniProtKB/Swiss-Prot:Q67VS7

Gene LinkOut

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Molecular Biology Databases
Research Materials