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LOC4341499 myb family transcription factor PHL7 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341499, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341499
Gene description
myb family transcription factor PHL7
Locus tag
OSNPB_060609500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0490F09.5
Expression
Ubiquitous expression in flower buds (RPKM 18.4), flowers (RPKM 11.1) and 6 other tissues See more
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Genomic context

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See LOC4341499 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25130845..25135322)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24268863..24273334)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT5.3 Neighboring gene ADP-ribosylation factor GTPase-activating protein AGD12 Neighboring gene probable calcium-binding protein CML21 Neighboring gene uncharacterized LOC4341501 Neighboring gene uncharacterized LOC4341502

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myb family transcription factor PHL7
Names
Os06g0609500
P0556B08.32
putative transfactor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    25130845..25135322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788539.3 → XP_015644025.1  myb family transcription factor PHL7

    UniProtKB/TrEMBL
    A2YEX2, A3BDG6, Q69V46, Q69XI2
    Conserved Domains (2) summary
    TIGR01557
    Location:47 → 103
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:134 → 179
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

  2. XM_026026078.2 → XP_025881863.1  myb family transcription factor PHL7

    UniProtKB/TrEMBL
    A2YEX2, A3BDG6, Q69V46, Q69XI2
    Conserved Domains (2) summary
    TIGR01557
    Location:47 → 103
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:134 → 179
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

  3. XM_015788538.3 → XP_015644024.1  myb family transcription factor PHL7

    UniProtKB/TrEMBL
    A2YEX2, A3BDG6, Q69V46, Q69XI2
    Conserved Domains (2) summary
    TIGR01557
    Location:47 → 103
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:134 → 179
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
Nucleotide Protein
Heading Accession and Version

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