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LOC4341323 UDP-glycosyltransferase TURAN [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341323, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4341323
Gene description
UDP-glycosyltransferase TURAN
Locus tag
OSNPB_060564800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0513E02.8
Expression
Ubiquitous expression in flower buds (RPKM 2.6), leaves before flowering (RPKM 2.4) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 6
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22593075..22606649, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21734400..21747974, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene cysteine synthase Neighboring gene glutathione S-transferase T3-like Neighboring gene cysteine synthase-like Neighboring gene putative pentatricopeptide repeat-containing protein At2g02150 Neighboring gene cytochrome P450 711A1 Neighboring gene putative heat stress transcription factor A-6a Neighboring gene uncharacterized LOC4341327

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glycosyltransferase TURAN
Names
Os06g0564800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    22593075..22606649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066311877.1 → XP_066167974.1  UDP-glycosyltransferase TURAN isoform X2

    UniProtKB/TrEMBL
    B8B3T1, B9FTT6

  2. XM_066311876.1 → XP_066167973.1  UDP-glycosyltransferase TURAN isoform X1

    UniProtKB/TrEMBL
    B8B3T1, B9FTT6

  3. XM_015786071.3 → XP_015641557.1  UDP-glycosyltransferase TURAN isoform X1

    UniProtKB/TrEMBL
    B8B3T1, B9FTT6
    Conserved Domains (1) summary
    PLN02275
    Location:18 → 430
    PLN02275; transferase, transferring glycosyl groups

  4. XM_066311878.1 → XP_066167975.1  UDP-glycosyltransferase TURAN isoform X3

    UniProtKB/TrEMBL
    B8B3T1, B9FTT6

  5. XM_066311879.1 → XP_066167976.1  UDP-glycosyltransferase TURAN isoform X4

    UniProtKB/TrEMBL
    B8B3T1, B9FTT6

RNA

  1. XR_010742187.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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