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GSK4 shaggy-related protein kinase GSK4-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341251, updated on 10-Oct-2024

Summary

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Gene symbol
GSK4
Gene description
shaggy-related protein kinase GSK4-like
Locus tag
OSNPB_060547900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsGSK4; SKETHA; OsKETHA; OsJ_21630
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Genomic context

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See GSK4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (21575720..21582691)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20717814..20724610)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene peroxidase P7 Neighboring gene peroxidase P7 Neighboring gene aspartate aminotransferase, mitochondrial Neighboring gene berberine bridge enzyme-like Cyn d 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
shaggy-related protein kinase GSK4
Names
LOC_Os06g35530
OSJNBa0016D02.31
Os06g0547900
glycogen synthase kinase3-like protein 4
shaggy-like kinase etha (OSKetha)
shaggy-related protein kinase eta
shaggy-related protein kinase etha homolog
NP_001389787.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402858.1 → NP_001389787.1  shaggy-related protein kinase GSK4

    Status: VALIDATED

    Source sequence(s)
    CB657124, CB669172, CI271039, CI742989
    UniProtKB/Swiss-Prot
    O04401, Q5Z7J0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    21575720..21582691
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5Z7J0.1 GenPept UniProtKB/Swiss-Prot:Q5Z7J0

Gene LinkOut

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Molecular Biology Databases
Research Materials