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LOC4341242 exopolygalacturonase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341242, updated on 12-Jul-2024

Summary

Gene symbol
LOC4341242
Gene description
exopolygalacturonase
Locus tag
OSNPB_060545400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1212_H09.15
Expression
Biased expression in flowers (RPKM 235.5) and flower buds (RPKM 84.1) See more
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Genomic context

See LOC4341242 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (21449464..21451204, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20591829..20593505, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene calmodulin-binding receptor kinase CaMRLK Neighboring gene exopolygalacturonase-like Neighboring gene uncharacterized LOC136357024 Neighboring gene exopolygalacturonase

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
exopolygalacturonase
Names
Os06g0545400
P0007G12.31
polygalacturonase
putative polygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    21449464..21451204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015786643.3XP_015642129.1  exopolygalacturonase

    UniProtKB/TrEMBL
    A0A1L2JRB2, A2YDW5, Q5Z5X0, Q5Z9T3
    Conserved Domains (2) summary
    pfam00295
    Location:72402
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:1404
    PL-6; Polysaccharide Lyase Family 6