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LOC4341219 T-complex protein 1 subunit gamma [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341219, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341219
Gene description
T-complex protein 1 subunit gamma
Locus tag
OSNPB_060538000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4341219 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (21015071..21022027)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20158628..20165608)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene PLASMODESMATA CALLOSE-BINDING PROTEIN 5 Neighboring gene uncharacterized LOC112939279 Neighboring gene uncharacterized LOC4341220 Neighboring gene uncharacterized LOC4341221

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chaperonin-containing T-complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-complex protein 1 subunit gamma
Names
Os06g0538000
P0551A03.30
putative CCT chaperonin gamma subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    21015071..21022027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788576.3 → XP_015644062.1  T-complex protein 1 subunit gamma

    UniProtKB/TrEMBL
    A0A0P0WXV6, B8B3C8, B9FTM3, Q5Z6U5
    Conserved Domains (1) summary
    TIGR02344
    Location:6 → 531
    chap_CCT_gamma; T-complex protein 1, gamma subunit
Nucleotide Protein
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