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LOC4340863 mannan endo-1,4-beta-mannosidase 6-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340863, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4340863
Gene description
mannan endo-1,4-beta-mannosidase 6-like
Locus tag
OSNPB_060311600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
MAN6; OsMAN6
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Genomic context

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See LOC4340863 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (12060576..12064813)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (11877508..11881879)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene putative E3 ubiquitin-protein ligase SINA-like 9 Neighboring gene uncharacterized LOC112939379 Neighboring gene anthranilate O-methyltransferase 2 Neighboring gene uncharacterized LOC136356983

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannan endo-1,4-beta-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannan endo-1,4-beta-mannosidase 6
Names
Beta-mannanase 6
Endo-beta-1,4-mannanase 6
LOC_Os06g20620
OSJNBb0005N06.19
putative endo-beta-1,4-mannanase
NP_001408517.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421588.1 → NP_001408517.1  mannan endo-1,4-beta-mannosidase 6 precursor

    Status: VALIDATED

    Source sequence(s)
    AK242683, CB664695, CB664696, CI364760
    UniProtKB/Swiss-Prot
    A0A0N7KM01, Q0DCM5, Q5Z7X8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    12060576..12064813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0DCM5.2 GenPept UniProtKB/Swiss-Prot:Q0DCM5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials