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LOC4340679 endoglucanase 17-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340679, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4340679
Gene description
endoglucanase 17-like
Locus tag
OSNPB_060256900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GLU13; OsGLU13; OsJ_020012
Expression
Biased expression in flower buds (RPKM 7.0), flowers (RPKM 2.7) and 1 other tissue See more
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Genomic context

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See LOC4340679 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (8348247..8353805, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (8178990..8184622, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene glucose-6-phosphate isomerase, cytosolic B-like Neighboring gene uncharacterized protein At3g17950 Neighboring gene signal recognition particle 9 kDa protein Neighboring gene ribonucleoside-diphosphate reductase small chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoglucanase 17
Names
Endo-1,4-beta glucanase 17
LOC_Os06g14540
P0624H09.19
putative endo-1,4-beta-glucanase
NP_001408457.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421528.1 → NP_001408457.1  endoglucanase 17 precursor

    Status: VALIDATED

    Source sequence(s)
    AK060686, AP014962, CI129958
    UniProtKB/Swiss-Prot
    A0A0P0WUX1, Q0DD41, Q652F9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    8348247..8353805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q652F9.1 GenPept UniProtKB/Swiss-Prot:Q652F9

Gene LinkOut

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Molecular Biology Databases
Research Materials