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LOC4340564 beta-1,3-galactosyltransferase GALT1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340564, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4340564
Gene description
beta-1,3-galactosyltransferase GALT1
Locus tag
OSNPB_060229200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 76.6), roots after flowering (RPKM 24.3) and 5 other tissues See more
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Genomic context

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See LOC4340564 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (6884336..6890050)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (6715891..6721974)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g62260, mitochondrial Neighboring gene ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like Neighboring gene homeobox protein HAZ1-like Neighboring gene GDSL esterase/lipase At1g74460

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase GALT1
Names
Os06g0229200
P0525F01.16
beta-1,3-galactosyltransferase 15
putative beta-1,3-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    6884336..6890050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788359.3 → XP_015643845.1  beta-1,3-galactosyltransferase GALT1

    UniProtKB/TrEMBL
    A0A0P0WUE8, B8B493, Q0DDE6, Q67X53
    Conserved Domains (1) summary
    PLN03133
    Location:1 → 637
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
Heading Accession and Version

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Research Materials