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LOC4340468 galactoside 2-alpha-L-fucosyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340468, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4340468
Gene description
galactoside 2-alpha-L-fucosyltransferase
Locus tag
OSNPB_060212500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4340468 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (5898951..5900967)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (5732073..5734109)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene galactoside 2-alpha-L-fucosyltransferase Neighboring gene fucosyltransferase 2 Neighboring gene galactoside 2-alpha-L-fucosyltransferase Neighboring gene luminal-binding protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactoside 2-alpha-L-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactoside 2-alpha-L-fucosyltransferase
Names
Os06g0212500
P0021C04.43
P0701E03.20
putative galactoside 2-alpha-L-fucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    5898951..5900967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787104.3 → XP_015642590.2  galactoside 2-alpha-L-fucosyltransferase

    UniProtKB/TrEMBL
    A2YAL9, Q69TV3, Q69YE4
    Conserved Domains (1) summary
    cl16914
    Location:87 → 535
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins
Nucleotide Protein
Heading Accession and Version

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