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LOC4340443 probable cyclic nucleotide-gated ion channel 20, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340443, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4340443
Gene description
probable cyclic nucleotide-gated ion channel 20, chloroplastic
Locus tag
OSNPB_060207700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0664C05.6
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Genomic context

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See LOC4340443 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (5627642..5638513, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (5461016..5471938, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein trichome birefringence-like 1 Neighboring gene uncharacterized LOC107277165 Neighboring gene homeobox-leucine zipper protein ROC8-like Neighboring gene uncharacterized LOC107277555

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CNGCs break through-A rice cyclic nucleotide-gated channel paves the way for pollen tube growth. Moeder W, et al. PLoS Genet, 2017 Nov. PMID 29190294, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Studies indicate that cyclic nucleotide-gated channel 13 (OsCNGC13) is a player in pollen tube-pistil signaling.
    Title: CNGCs break through-A rice cyclic nucleotide-gated channel paves the way for pollen tube growth.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable cyclic nucleotide-gated ion channel 20, chloroplastic
Names
Os06g0207700
P0529B09.26
putative cyclic nucleotide-regulated ion channel

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    5627642..5638513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788566.3 → XP_015644052.1  probable cyclic nucleotide-gated ion channel 20, chloroplastic

    UniProtKB/TrEMBL
    A0A0N7KLR0, A0A8J8XS48, A2YAI2, A3B9H5, Q69T65
    Conserved Domains (2) summary
    cd00038
    Location:567 → 692
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00520
    Location:177 → 364
    Ion_trans; Ion transport protein

  2. XM_015788564.3 → XP_015644050.1  probable cyclic nucleotide-gated ion channel 20, chloroplastic

    UniProtKB/TrEMBL
    A0A0N7KLR0, A0A8J8XS48, A2YAI2, A3B9H5, Q69T65
    Conserved Domains (2) summary
    cd00038
    Location:567 → 692
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00520
    Location:177 → 364
    Ion_trans; Ion transport protein
Nucleotide Protein
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