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LOC4340376 26S proteasome regulatory subunit 7A-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340376, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4340376
Gene description
26S proteasome regulatory subunit 7A-like
Locus tag
OSNPB_060192600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RPT1B; OsRPT1; OsJ_20424
Expression
Ubiquitous expression in flower buds (RPKM 78.9), mature seeds (RPKM 76.5) and 6 other tissues See more
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Genomic context

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See LOC4340376 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (4832270..4835746)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (4667475..4670858)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene hydroxyproline O-galactosyltransferase GALT3 Neighboring gene pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 Neighboring gene RING-H2 finger protein ATL3 Neighboring gene uncharacterized LOC4340378

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proteasome-activating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome regulatory subunit 7B
Names
26S protease regulatory subunit 7
26S protease regulatory subunit 7B
26S proteasome AAA-ATPase subunit RPT1B
26S proteasome regulatory particle triple-A ATPase subunit1
26S proteasome subunit 7B
LOC_Os06g09290
OSJNBa0090D06.53
P0698A06.13
Regulatory particle triple-A ATPase subunit 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402773.1 → NP_001389702.1  26S proteasome regulatory subunit 7B

    Status: VALIDATED

    Source sequence(s)
    CB651398, CB662501, CI111527, CI175656, CI739269
    UniProtKB/Swiss-Prot
    A0A0P0VQC0, A3B973, P0DKJ9, P0DKK0, Q0DDX2, Q6K8W1, Q8W3P0, Q9FXT9
    UniProtKB/TrEMBL
    A2XAB9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    4832270..4835746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DKK0.1 GenPept UniProtKB/Swiss-Prot:P0DKK0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials