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LOC4339892 6-phosphogluconate dehydrogenase, decarboxylating 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339892, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4339892
Gene description
6-phosphogluconate dehydrogenase, decarboxylating 1-like
Locus tag
OSNPB_060111500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
G6PGH1; OsG6PGH1; OsJ_19864
Expression
Ubiquitous expression in leaves after flowering (RPKM 393.9), roots after flowering (RPKM 320.9) and 6 other tissues See more
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Genomic context

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See LOC4339892 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (799920..802978)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (643610..646721)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g27270 Neighboring gene extra-large guanine nucleotide-binding protein 3 Neighboring gene putative acyl-activating enzyme 19 Neighboring gene uncharacterized LOC4339894

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Molecular cloning and characterization of rice 6-phosphogluconate dehydrogenase gene that is up-regulated by salt stress. Huang J, et al. Mol Biol Rep, 2003 Dec. PMID 14672408
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphogluconate dehydrogenase (decarboxylating) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-gluconate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)
Names
6-phosphogluconate dehydrogenase, decarboxylating 1
LOC_Os06g02144
P0029D06.14-1
P0029D06.14-2
cytosolic 6-phosphogluconate dehydrogenase
putative phosphogluconate dehydrogenase
NP_001389624.1
NP_001389626.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402695.1 → NP_001389624.1  phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)

    Status: VALIDATED

    Source sequence(s)
    AK065920, AU223121, CI017955
    UniProtKB/Swiss-Prot
    A0A0P0WRR6, Q7FRX8, Q9LI00
    UniProtKB/TrEMBL
    A0A0B4U151, A0A0N7KLE5

  2. NM_001402697.1 → NP_001389626.1  phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)

    Status: VALIDATED

    Source sequence(s)
    AK065920, CF276644, CI017955, CI598749
    UniProtKB/Swiss-Prot
    A0A0P0WRR6, Q7FRX8, Q9LI00
    UniProtKB/TrEMBL
    A0A0B4U151, A0A0N7KLE5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    799920..802978
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LI00.1 GenPept UniProtKB/Swiss-Prot:Q9LI00

Gene LinkOut

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Molecular Biology Databases
Research Materials