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LOC4339865 septum site-determining protein minD homolog, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339865, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4339865
Gene description
septum site-determining protein minD homolog, chloroplastic
Locus tag
OSNPB_060106000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 10.5), flowers (RPKM 9.4) and 6 other tissues See more
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Genomic context

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See LOC4339865 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (566962..569025)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (410912..413036)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein REVEILLE 6 Neighboring gene uncharacterized LOC4339864 Neighboring gene uncharacterized LOC4339866 Neighboring gene uncharacterized LOC107281230 Neighboring gene uncharacterized LOC4339867

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cell division IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
septum site-determining protein minD homolog, chloroplastic
Names
Os06g0106000
P0644B06.32
putative minD
putative septum site-determining protein minD homolog, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    566962..569025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787444.3 → XP_015642930.1  septum site-determining protein minD homolog, chloroplastic

    UniProtKB/TrEMBL
    A2Y8C2, Q0DF98, Q9LWY6
    Conserved Domains (1) summary
    CHL00175
    Location:30 → 278
    minD; septum-site determining protein; Validated
Nucleotide Protein
Heading Accession and Version

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