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LOC4339700 probable isoprenylcysteine alpha-carbonyl methylesterase ICME [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339700, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4339700
Gene description
probable isoprenylcysteine alpha-carbonyl methylesterase ICME
Locus tag
OSNPB_050577200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
IMCE; OJ1126_B10.7
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Genomic context

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See LOC4339700 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (28930707..28937227, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (28745108..28751803, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266881 Neighboring gene protein MIZU-KUSSEI 1 Neighboring gene probable calcium-binding protein CML14 Neighboring gene serine/threonine-protein kinase STY13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable isoprenylcysteine alpha-carbonyl methylesterase ICME
Names
LOC_Os05g50170
NP_001407835.1
NP_001407836.1
XP_015639667.2
XP_066166386.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420906.1 → NP_001407835.1  probable isoprenylcysteine alpha-carbonyl methylesterase ICME

    Status: VALIDATED

    Source sequence(s)
    AK069756, CI096250, CI286242
    UniProtKB/Swiss-Prot
    A0A0P0WQP7, Q6L5F5

  2. NM_001420907.1 → NP_001407836.1  probable isoprenylcysteine alpha-carbonyl methylesterase ICME

    Status: VALIDATED

    Source sequence(s)
    AK069756, CI286242
    UniProtKB/Swiss-Prot
    A0A0P0WQP7, Q6L5F5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    28930707..28937227 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066310289.1 → XP_066166386.1  probable isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2

  2. XM_015784181.3 → XP_015639667.2  probable isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6L5F5.1 GenPept UniProtKB/Swiss-Prot:Q6L5F5

Gene LinkOut

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Molecular Biology Databases
Research Materials