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LOC4339680 phospholipase A1-II 7-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339680, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4339680
Gene description
phospholipase A1-II 7-like
Locus tag
OSNPB_050574100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1268_B08.4; OJ1735_C10.22
Expression
Biased expression in flowers (RPKM 7.2), flower buds (RPKM 4.8) and 2 other tissues See more
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Genomic context

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See LOC4339680 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (28784276..28788610, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (28598932..28603279, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 7 Neighboring gene protein INCREASED PETAL GROWTH ANISOTROPY 1 Neighboring gene phospholipase A1-II 6 Neighboring gene small nucleolar RNA Z247 Neighboring gene histone H2B.9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phospholipase A1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipase A1-II 7
Names
LOC_Os05g49840
NP_001407816.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420887.1 → NP_001407816.1  phospholipase A1-II 7

    Status: VALIDATED

    Source sequence(s)
    AK106699, AP014961, CI090151, CI137951
    UniProtKB/Swiss-Prot
    A0A0N7KLA3, A2Y7R2, Q6F357

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    28784276..28788610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6F357.1 GenPept UniProtKB/Swiss-Prot:Q6F357

Gene LinkOut

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Molecular Biology Databases
Research Materials