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LOC4339583 branched-chain-amino-acid aminotransferase 5, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339583, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4339583
Gene description
branched-chain-amino-acid aminotransferase 5, chloroplastic
Locus tag
OSNPB_050558400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves after flowering (RPKM 94.7), flower buds (RPKM 93.9) and 6 other tissues See more
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Genomic context

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See LOC4339583 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (27963375..27969355)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27778774..27784808)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276763 Neighboring gene berberine bridge enzyme-like 23 Neighboring gene uncharacterized LOC136356560 Neighboring gene berberine bridge enzyme-like 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables branched-chain-amino-acid transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in branched-chain amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
branched-chain amino acid aminotransferase 2, chloroplastic; branched-chain-amino-acid aminotransferase 5, chloroplastic
Names
Os05g0558400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    27963375..27969355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015783758.3 → XP_015639244.2  branched-chain amino acid aminotransferase 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    B8AWI0

  2. XM_015783757.3 → XP_015639243.2  branched-chain amino acid aminotransferase 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    B8AWI0

  3. XM_026025299.2 → XP_025881084.2  branched-chain-amino-acid aminotransferase 5, chloroplastic isoform X2

    UniProtKB/TrEMBL
    A0A0P0XXH0

  4. XM_015783760.3 → XP_015639246.2  branched-chain amino acid aminotransferase 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    B8AWI0

  5. XM_015783759.3 → XP_015639245.2  branched-chain amino acid aminotransferase 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    B8AWI0

  6. XM_015783762.3 → XP_015639248.2  branched-chain-amino-acid aminotransferase 5, chloroplastic isoform X2

    UniProtKB/TrEMBL
    A0A0P0XXH0

  7. XM_066310626.1 → XP_066166723.1  branched-chain amino acid aminotransferase 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    B8AWI0
Nucleotide Protein
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