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LOC4339521 threonine synthase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339521, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4339521
Gene description
threonine synthase, chloroplastic
Locus tag
OSNPB_050549700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4339521 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (27455110..27457062)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27290563..27292508)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277235 Neighboring gene peptidyl-tRNA hydrolase, mitochondrial-like Neighboring gene AP2/ERF and B3 domain-containing protein Os05g0549800-like Neighboring gene lipid phosphate phosphatase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables threonine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cysteine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
threonine synthase, chloroplastic
Names
Os05g0549700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    27455110..27457062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785043.3 → XP_015640529.1  threonine synthase, chloroplastic

    UniProtKB/TrEMBL
    B9FLG9, Q6L4H5
    Conserved Domains (1) summary
    PLN02569
    Location:33 → 519
    PLN02569; threonine synthase
Nucleotide Protein
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