U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4339457 beta-galactosidase 8-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339457, updated on 16-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4339457
Gene description
beta-galactosidase 8-like
Locus tag
OSNPB_050539400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_19375
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4339457 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26912499..26919629, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26794391..26801519, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281000 Neighboring gene uncharacterized LOC9270344 Neighboring gene putative uncharacterized protein YDL057W Neighboring gene probable ADP,ATP carrier protein At5g56450

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
beta-galactosidase 8
Names
LOC_Os05g46200
Lactase 8
OSJNBa0052K01.15
NP_001407691.1
XP_015639207.1
XP_015639208.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420762.1 → NP_001407691.1  beta-galactosidase 8 precursor

    Status: VALIDATED

    Source sequence(s)
    AK068572, CB639584, CB645447, CF305053, CI026295, CI120299, CI578079
    UniProtKB/Swiss-Prot
    B7EF25, Q0DGD7, Q53WK7
    UniProtKB/TrEMBL
    B8AW61

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    26912499..26919629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015783722.3 → XP_015639208.1  beta-galactosidase 8 isoform X2

    Conserved Domains (2) summary
    pfam13364
    Location:470 → 534
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain
    cl07893
    Location:1 → 250
    AmyAc_family; Alpha amylase catalytic domain family

  2. XM_015783721.2 → XP_015639207.1  beta-galactosidase 8 isoform X1

    Conserved Domains (2) summary
    pfam13364
    Location:561 → 625
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain
    cl07893
    Location:40 → 341
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0DGD7.1 GenPept UniProtKB/Swiss-Prot:Q0DGD7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials