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LOC4339355 uncharacterized LOC4339355 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339355, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4339355
Gene description
uncharacterized LOC4339355
Locus tag
OSNPB_050521500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in mature seeds (RPKM 35.0), roots after flowering (RPKM 14.6) and 6 other tissues See more
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Genomic context

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See LOC4339355 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26060449..26065805)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (25942411..25947887)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene pseudo histidine-containing phosphotransfer protein 5-like Neighboring gene uncharacterized LOC107280995 Neighboring gene probable pectinesterase 53 Neighboring gene uncharacterized LOC107280849

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul4A-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4339355
Names
Os05g0521500
protein cereblon

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    26060449..26065805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785299.2 → XP_015640785.1  uncharacterized protein LOC4339355 isoform X1

    UniProtKB/TrEMBL
    B8B010
    Conserved Domains (2) summary
    cd15777
    Location:447 → 547
    CRBN_C_like; Thalidomide-binding C-terminal domain of cereblon (CRBN) and similar protein domains
    pfam02190
    Location:101 → 212
    LON_substr_bdg; ATP-dependent protease La (LON) substrate-binding domain

  2. XM_015785300.3 → XP_015640786.1  uncharacterized protein LOC4339355 isoform X2

    UniProtKB/TrEMBL
    B8B010, Q0DGN3, Q53WM9
    Conserved Domains (2) summary
    cd15777
    Location:443 → 543
    CRBN_C_like; Thalidomide-binding C-terminal domain of cereblon (CRBN) and similar protein domains
    pfam02190
    Location:97 → 208
    LON_substr_bdg; ATP-dependent protease La (LON) substrate-binding domain
Nucleotide Protein
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