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LOC4339345 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339345, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4339345
Gene description
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like
Locus tag
OSNPB_050519900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
STT3A; STT3-A; OsJ_19234; P0483D07.5
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Genomic context

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See LOC4339345 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (25929060..25935050, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (25811203..25817171, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene chaperone protein ClpB1-like Neighboring gene probable transcriptional regulatory protein At2g25830 Neighboring gene uncharacterized LOC107277484 Neighboring gene nuclear pore complex protein NUP35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oligosaccharyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Names
LOC_Os05g44360
Oligosaccharyl transferase subunit STT3A
P0599F04.15
Protein STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A
NP_001389543.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402614.1 → NP_001389543.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A

    Status: VALIDATED

    Source sequence(s)
    AK070919, AK101078, CB663560, CI367477, CI517749, CI751885
    UniProtKB/Swiss-Prot
    Q6F2Z1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    25929060..25935050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6F2Z1.1 GenPept UniProtKB/Swiss-Prot:Q6F2Z1

Gene LinkOut

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