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LOC4339344 probable transcriptional regulatory protein At2g25830 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339344, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4339344
Gene description
probable transcriptional regulatory protein At2g25830
Locus tag
OSNPB_050519800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4339344 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (25925440..25928977)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (25807554..25810952)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein DJ-1 homolog C Neighboring gene chaperone protein ClpB1-like Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like Neighboring gene uncharacterized LOC107277484

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable transcriptional regulatory protein At2g25830
Names
Os05g0519800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    25925440..25928977
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015783939.3 → XP_015639425.1  probable transcriptional regulatory protein At2g25830 isoform X1

    UniProtKB/TrEMBL
    A0A0P0WPT2, B9FL65, Q6F2Z2
    Conserved Domains (1) summary
    pfam01709
    Location:67 → 314
    Transcrip_reg; Transcriptional regulator

  2. XM_066310805.1 → XP_066166902.1  probable transcriptional regulatory protein At2g25830 isoform X2

Nucleotide Protein
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Research Materials