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LOC4339240 cyclic nucleotide-gated ion channel 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339240, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4339240
Gene description
cyclic nucleotide-gated ion channel 4
Locus tag
OSNPB_050502000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4339240 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (24826860..24831709)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (24711951..24716686)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene universal stress protein PHOS32 Neighboring gene uncharacterized LOC107278385 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic nucleotide-gated ion channel 4
Names
Os05g0502000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    24826860..24831709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015782309.3 → XP_015637795.1  cyclic nucleotide-gated ion channel 4

    UniProtKB/TrEMBL
    A0A0P0WP96, A2Y691, Q60EI8
    Conserved Domains (2) summary
    PLN03192
    Location:342 → 528
    PLN03192; Voltage-dependent potassium channel; Provisional
    cd00038
    Location:495 → 601
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
Nucleotide Protein
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