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LOC4339038 probable DNA helicase MCM8 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339038, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4339038
Gene description
probable DNA helicase MCM8
Locus tag
OSNPB_050464100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
MCM8; OsMCM8; OsJ_18839; OJ1280_A04.12
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Genomic context

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See LOC4339038 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22902837..22912318)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22789259..22798747)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit B-3-like Neighboring gene E3 ubiquitin-protein ligase UPL4 Neighboring gene uncharacterized LOC4339039 Neighboring gene uncharacterized LOC136356551

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MCM complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable DNA helicase MCM8
Names
LOC_Os05g38850
Minichromosome maintenance 8
NP_001407459.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420530.1 → NP_001407459.1  probable DNA helicase MCM8

    Status: VALIDATED

    Source sequence(s)
    AK108033, AP014961
    UniProtKB/Swiss-Prot
    B9FKM7, Q60EQ1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    22902837..22912318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_010741211.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B9FKM7.1 GenPept UniProtKB/Swiss-Prot:B9FKM7

Gene LinkOut

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Molecular Biology Databases
Research Materials