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P5CS1 delta-1-pyrroline-5-carboxylate synthase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338979, updated on 10-Oct-2024

Summary

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Gene symbol
P5CS1
Gene description
delta-1-pyrroline-5-carboxylate synthase 1-like
Locus tag
OSNPB_050455500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P5CS; OSP5CS; OsP5CS1; OJ1651_D06.9
Expression
Ubiquitous expression in flower buds (RPKM 36.3), milk grains (RPKM 35.6) and 6 other tissues See more
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Genomic context

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See P5CS1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22487464..22494308, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22374199..22380914, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene BEL1-like homeodomain protein 9 Neighboring gene transcription factor ILR3 Neighboring gene PRA1 family protein A1 Neighboring gene uracil phosphoribosyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Real time PCR expression analysis of gene encoding p5cs enzyme and proline metabolism under NaCI salinity in rice. Bagdi DL, et al. J Environ Biol, 2015 Jul. PMID 26364475
  2. Characterization of the gene for delta1-pyrroline-5-carboxylate synthetase and correlation between the expression of the gene and salt tolerance in Oryza sativa L. Igarashi Y, et al. Plant Mol Biol, 1997 Mar. PMID 9106509
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. up-regulated under salinity stress
    Title: Real time PCR expression analysis of gene encoding p5cs enzyme and proline metabolism under NaCI salinity in rice.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate-5-semialdehyde dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proline biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-1-pyrroline-5-carboxylate synthase 1
Names
LOC_Os05g38150
delta-1-pyrroline-5-carboxylate synthetase
deltal-pyrroline-5-carboxylate synthetase
NP_001389494.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402565.1 → NP_001389494.1  delta-1-pyrroline-5-carboxylate synthase 1

    Status: VALIDATED

    Source sequence(s)
    AK101985, AK102633, AY574031, CI312568, CI616672
    UniProtKB/Swiss-Prot
    O04226, Q0DHN6, Q60EM4, Q6PW76

RNA

  1. NR_175278.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK101985, AK102633, AY574031, CI312568, CI616672, CI754543

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    22487464..22494308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O04226.2 GenPept UniProtKB/Swiss-Prot:O04226

Gene LinkOut

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Molecular Biology Databases
Research Materials