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LOC4338902 protein S-acyltransferase 8 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338902, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4338902
Gene description
protein S-acyltransferase 8
Locus tag
OSNPB_050436900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in milk grains (RPKM 6.7), flower buds (RPKM 5.1) and 5 other tissues See more
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Genomic context

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See LOC4338902 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (21495600..21499473)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (21378638..21392680)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene signal peptide peptidase 2-like Neighboring gene uncharacterized LOC136356744 Neighboring gene ethylene-responsive transcription factor ABR1 Neighboring gene protein LIKE COV 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-cysteine S-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-L-cysteine S-palmitoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein S-acyltransferase 8
Names
Os05g0436900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    21495600..21499473
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015784528.3 → XP_015640014.1  protein S-acyltransferase 8

    UniProtKB/TrEMBL
    B8AYK7, B9FPS7, Q0DHW0
    Conserved Domains (1) summary
    pfam01529
    Location:137 → 262
    DHHC; DHHC palmitoyltransferase
Nucleotide Protein
Heading Accession and Version

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