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LOC4338802 beta-hexosaminidase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338802, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4338802
Gene description
beta-hexosaminidase 3
Locus tag
OSNPB_050415700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in milk grains (RPKM 15.5), flowers (RPKM 12.8) and 6 other tissues See more
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Genomic context

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See LOC4338802 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (20417851..20423020)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (20315461..20320674)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene glutathione gamma-glutamylcysteinyltransferase 1 Neighboring gene NAC domain-containing protein 67-like Neighboring gene uncharacterized LOC4338801 Neighboring gene obtusifoliol 14-alpha demethylase Neighboring gene obtusifoliol 14-alpha demethylase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-N-acetylhexosaminidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycosaminoglycan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-hexosaminidase 3
Names
Os05g0415700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    20417851..20423020
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066310813.1 → XP_066166910.1  beta-hexosaminidase 3

    UniProtKB/TrEMBL
    A0A0P0WMD4, B9FPM1, Q5WMR0, Q6AT83

  2. XM_015785168.3 → XP_015640654.1  beta-hexosaminidase 3

    UniProtKB/TrEMBL
    A0A0P0WMD4, B9FPM1, Q5WMR0, Q6AT83
    Conserved Domains (2) summary
    cd06562
    Location:176 → 508
    GH20_HexA_HexB-like; Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the ...
    pfam14845
    Location:33 → 151
    Glycohydro_20b2; beta-acetyl hexosaminidase like
Nucleotide Protein
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