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LOC4338552 serine/arginine-rich-splicing factor SR34 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338552, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4338552
Gene description
serine/arginine-rich-splicing factor SR34
Locus tag
OSNPB_050364600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4338552 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (17546121..17553195)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (17446090..17453210)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271982 Neighboring gene chaperone protein dnaJ 49 Neighboring gene SNF1-related protein kinase regulatory subunit gamma-1-like Neighboring gene amino acid transporter AVT1I-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich-splicing factor SR34
Names
Os05g0364600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    17546121..17553195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785255.3 → XP_015640741.1  serine/arginine-rich-splicing factor SR34

    UniProtKB/TrEMBL
    B9FP64, Q0DIT6
    Conserved Domains (2) summary
    cd12599
    Location:8 → 79
    RRM1_SF2_plant_like; RNA recognition motif 1 (RRM1) found in plant pre-mRNA-splicing factor SF2 and similar proteins
    cd12602
    Location:108 → 183
    RRM2_SF2_plant_like; RNA recognition motif 2 (RRM2) found in plant pre-mRNA-splicing factor SF2 and similar proteins

RNA

  1. XR_010741382.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials