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LOC4338276 peroxisome biogenesis protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338276, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4338276
Gene description
peroxisome biogenesis protein 2
Locus tag
OSNPB_050275700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4338276 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (11356152..11362739, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (11320504..11327131, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At1g19290 Neighboring gene uncharacterized LOC4338275 Neighboring gene cation/H(+) antiporter 19 Neighboring gene uncharacterized LOC136356625

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into peroxisome matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome biogenesis protein 2
Names
Os05g0275700
putative peroxisome assembly protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    11356152..11362739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015782272.3 → XP_015637758.1  peroxisome biogenesis protein 2

    UniProtKB/TrEMBL
    B8AW27, B9FNL9, Q6ATD1
    Conserved Domains (2) summary
    cd16526
    Location:289 → 330
    RING-HC_PEX2; RING finger, HC subclass, found in peroxin-2 (PEX2) and similar proteins
    pfam04757
    Location:62 → 254
    Pex2_Pex12; Pex2 / Pex12 amino terminal region
Nucleotide Protein
Heading Accession and Version

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