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LOC4337630 nudix hydrolase 9 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337630, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4337630
Gene description
nudix hydrolase 9
Locus tag
OSNPB_050117500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 8.0), flower buds (RPKM 6.6) and 6 other tissues See more
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Genomic context

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See LOC4337630 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (934363..938462)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (921968..926095)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene classical arabinogalactan protein 9 Neighboring gene transfer RNA arginine (anticodon UCG) Neighboring gene E3 UFM1-protein ligase 1 homolog Neighboring gene transfer RNA glutamic acid (anticodon CUC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-mannose hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nudix hydrolase 9
Names
Os05g0117500

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001428227.1 → NP_001415156.1  nudix hydrolase 9

    Status: VALIDATED

    Source sequence(s)
    AK073223
    UniProtKB/TrEMBL
    A0A0P0WH64, A2XZQ7, Q5W7C8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    934363..938462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_003242336.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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