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LOC4337554 methionine S-methyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337554, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4337554
Gene description
methionine S-methyltransferase
Locus tag
OSNPB_050105000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves after flowering (RPKM 108.7), roots after flowering (RPKM 95.6) and 4 other tissues See more
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Genomic context

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See LOC4337554 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (275867..286080, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (267956..278070, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit F Neighboring gene E3 ubiquitin-protein ligase CHIP Neighboring gene uncharacterized LOC112939029 Neighboring gene ras-related protein RABA2a Neighboring gene GTP-binding protein YPTM1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methionine S-methyltransferase
Names
Os05g0105000
Os05g0105050

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    275867..286080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015783676.3 → XP_015639162.1  methionine S-methyltransferase isoform X1

    UniProtKB/TrEMBL
    B8AWY8
    Conserved Domains (1) summary
    PLN02672
    Location:8 → 1079
    PLN02672; methionine S-methyltransferase

  2. XM_015783677.3 → XP_015639163.1  methionine S-methyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A0P0WH48, B8AWY8, Q65XI9, Q75M18
    Conserved Domains (1) summary
    PLN02672
    Location:1 → 1073
    PLN02672; methionine S-methyltransferase
Nucleotide Protein
Heading Accession and Version

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