U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4337539 photosynthetic NDH subunit of lumenal location 5, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337539, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4337539
Gene description
photosynthetic NDH subunit of lumenal location 5, chloroplastic
Locus tag
OSNPB_050103200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4337539 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (193526..196258)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (185614..188470)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix protein 80 Neighboring gene uncharacterized LOC4337538 Neighboring gene uncharacterized LOC4337540 Neighboring gene uncharacterized LOC4337541

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein peptidyl-prolyl isomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
photosynthetic NDH subunit of lumenal location 5, chloroplastic
Names
Os05g0103200

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    193526..196258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785270.3 → XP_015640756.1  photosynthetic NDH subunit of lumenal location 5, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0WGX4, A2XZE6, B9FK07, Q75M32
    Conserved Domains (1) summary
    cd01926
    Location:84 → 245
    cyclophilin_ABH_like; Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials