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LOC4337536 vacuolar protein sorting-associated protein 60.2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337536, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4337536
Gene description
vacuolar protein sorting-associated protein 60.2
Locus tag
OSNPB_050102900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4337536 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (182348..185363)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (174443..177544)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase ORTHRUS 2 Neighboring gene protein MEI2-like 3 Neighboring gene basic helix-loop-helix protein 80 Neighboring gene uncharacterized LOC4337538

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in late endosome to vacuole transport via multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle budding from membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 60.2
Names
Os05g0102900
charged multivesicular body protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    182348..185363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015782163.3 → XP_015637649.1  vacuolar protein sorting-associated protein 60.2

    UniProtKB/TrEMBL
    A0A0P0WH83, A0A5S6RAR2, B8AWJ4, Q75M34, Q9FW24
    Conserved Domains (1) summary
    cl21588
    Location:1 → 225
    Snf7
Nucleotide Protein
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