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LOC4337426 general transcription and DNA repair factor IIH subunit TFB2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337426, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4337426
Gene description
general transcription and DNA repair factor IIH subunit TFB2
Locus tag
OSNPB_040680000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4337426 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (35245049..35250495)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34725056..34730537)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase AIRP2-like Neighboring gene tetraspanin-19 Neighboring gene uncharacterized LOC4337427 Neighboring gene probable allantoinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIH core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIIH holo complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription and DNA repair factor IIH subunit TFB2
Names
Os04g0680000
general transcription factor IIH subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    35245049..35250495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778262.3 → XP_015633748.1  general transcription and DNA repair factor IIH subunit TFB2 isoform X1

    UniProtKB/TrEMBL
    A0A0P0WGE9, B8ARH2, Q7XKD9
    Conserved Domains (2) summary
    pfam03849
    Location:13 → 366
    Tfb2; Transcription factor Tfb2
    pfam18307
    Location:381 → 448
    Tfb2_C; Transcription factor Tfb2 (p52) C-terminal domain

  2. XM_026025155.2 → XP_025880940.1  general transcription and DNA repair factor IIH subunit TFB2 isoform X2

    Conserved Domains (1) summary
    pfam03849
    Location:6 → 277
    Tfb2; Transcription factor Tfb2
Nucleotide Protein
Heading Accession and Version

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